| Rank | Player | TD% | Years | Teams |
|---|---|---|---|---|
| 1. | Alex Smith (27) | 7.1% | 2005-2012 | sfo |
| Jay Cutler (28) | 7.1% | 2006-2012 | chi | |
| 3. | Matthew Stafford (23) | 7.0% | 2009-2012 | det |
| 4. | Aaron Rodgers (28) | 5.7% | 2005-2012 | gnb |
| 5. | Drew Brees (32) | 5.6% | 2001-2012 | 2TM |
| Russell Wilson (23) | 5.6% | 2012 | sea | |
| 7. | Joe Flacco (26) | 5.2% | 2008-2012 | rav |
| 8. | Colin Kaepernick (24) | 5.1% | 2011-2012 | sfo |
| 9. | Matt Ryan (26) | 4.8% | 2008-2012 | atl |
| 10. | Tom Brady (34) | 4.6% | 2000-2012 | nwe |
| 11. | Matt Hasselbeck (36) | 4.5% | 1999-2012 | sea |
| 12. | Ben Roethlisberger (29) | 4.3% | 2004-2012 | pit |
| Mark Sanchez (25) | 4.3% | 2009-2012 | nyj | |
| 14. | Eli Manning (30) | 4.1% | 2004-2012 | nyg |
| 15. | Peyton Manning (35) | 3.7% | 1998-2012 | 2TM |
| 16. | Joe Webb (25) | 3.3% | 2010-2012 | min |
| 17. | Tony Romo (31) | 3.0% | 2004-2012 | dal |
| 18. | Carson Palmer (32) | 2.8% | 2004-2012 | cin |
| 19. | Philip Rivers (30) | 2.4% | 2004-2012 | sdg |
| 20. | Matt Schaub (30) | 2.2% | 2004-2012 | htx |
| 21. | Michael Vick (31) | 1.4% | 2001-2012 | 2TM |
| 22. | T.J. Yates (24) | 0.0% | 2011-2012 | htx |
| Andrew Luck (22) | 0.0% | 2012 | clt | |
| Byron Leftwich (31) | 0.0% | 2003-2012 | jax | |
| Tarvaris Jackson (28) | 0.0% | 2006-2012 | min | |
| Andy Dalton (24) | 0.0% | 2011-2012 | cin |