| Rank | Player | TD% | Years | Teams |
|---|---|---|---|---|
| 1. | Aaron Rodgers (29) | 6.4% | 2005-2012 | gnb |
| 2. | Tom Brady (35) | 5.6% | 2000-2012 | nwe |
| Peyton Manning (36) | 5.6% | 1998-2012 | 2TM | |
| 4. | Tony Romo (32) | 5.5% | 2004-2012 | dal |
| 5. | Philip Rivers (31) | 5.3% | 2004-2012 | sdg |
| Drew Brees (33) | 5.3% | 2001-2012 | 2TM | |
| 7. | Ben Roethlisberger (30) | 5.1% | 2004-2012 | pit |
| 8. | Matt Ryan (27) | 4.8% | 2008-2012 | atl |
| 9. | Eli Manning (31) | 4.7% | 2004-2012 | nyg |
| 10. | Jay Cutler (29) | 4.6% | 2006-2012 | 2TM |
| Carson Palmer (33) | 4.6% | 2004-2012 | 2TM | |
| 12. | Andy Dalton (25) | 4.5% | 2011-2012 | cin |
| 13. | Shaun Hill (32) | 4.3% | 2005-2012 | 3TM |
| Matthew Stafford (24) | 4.3% | 2009-2012 | det | |
| Michael Vick (32) | 4.3% | 2001-2012 | 2TM | |
| Matt Schaub (31) | 4.3% | 2004-2012 | 2TM | |
| 17. | Josh Freeman (24) | 4.2% | 2009-2012 | tam |
| 18. | Joe Flacco (27) | 4.1% | 2008-2012 | rav |
| Ryan Fitzpatrick (30) | 4.1% | 2005-2012 | 3TM | |
| 20. | Matt Cassel (30) | 4.0% | 2005-2012 | 2TM |
| Matt Hasselbeck (37) | 4.0% | 1999-2012 | 3TM | |
| Cam Newton (23) | 4.0% | 2011-2012 | car | |
| 23. | Charlie Batch (38) | 3.8% | 1998-2012 | 2TM |
| 24. | Alex Smith (28) | 3.7% | 2005-2012 | sfo |
| Derek Anderson (29) | 3.7% | 2006-2012 | 3TM | |
| Kyle Orton (30) | 3.7% | 2005-2012 | 4TM | |
| 27. | Mark Sanchez (26) | 3.6% | 2009-2012 | nyj |
| Byron Leftwich (32) | 3.6% | 2003-2012 | 4TM | |
| Tarvaris Jackson (29) | 3.6% | 2006-2012 | 3TM | |
| 30. | Jason Campbell (31) | 3.5% | 2006-2012 | 3TM |
| 31. | Chad Henne (27) | 3.1% | 2008-2012 | 2TM |
| 32. | Sam Bradford (25) | 3.0% | 2010-2012 | ram |
| 33. | David Carr (33) | 2.9% | 2002-2012 | 4TM |